PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01452.1.g00250.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 358aa    MW: 39915.8 Da    PI: 9.2005
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01452.1.g00250.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.72.4e-351552482103
                                   HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEE CS
                  HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweF 81 
                                   Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF
  Zmw_sc01452.1.g00250.1.am.mk 155 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEF 226
                                   9********************6667*****************************************999.........*** PP

                                   EESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  82 khksFkkgkkellekikrkkse 103
                                   +++ F+kg+k+ll++i+r+k++
  Zmw_sc01452.1.g00250.1.am.mk 227 ANEFFRKGDKQLLCEIHRRKTS 248
                                   *******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-36144240IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.1E-58151245IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-31152245IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-19155178IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-30155245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-19194206IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340195219IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-19207219IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAEGWVKRGV KDAKILEKAR KTNGTDGWRK CHGWTLKAAA SQNFQSLSLK HPEADRQSDT  60
YSLPPPPPPR TLPEAGTHAT FAIRSHLLRF PSPSPGEDDR KGELKPRETF VHASAPVEEN  120
GGKDRERMER VERCGSWECD AAAQSAAQKA VPAPFLTKTY QLVDDPATDH IVSWGDDRVS  180
TFVVWRPPEF ARDILPNYFK HNNFSSFVRQ LNTYGFRKVV PERWEFANEF FRKGDKQLLC  240
EIHRRKTSSA STASPSPPPF FAPPHFPLFH PGVQHHHHQF VGDDGVVAAH GVSVGFPHPH  300
WREQHAATRL LALGAPATSP SSATDGGNGR AATAAVLMEE NERLRRSNTA LLQELAHM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2113524710131Heat shock factor protein 1
5d5v_B1e-2113524710131Heat shock factor protein 1
5d5v_D1e-2113524710131Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957003.11e-104PREDICTED: heat stress transcription factor B-4c-like
SwissprotQ67U941e-105HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLA0A0E0M1Z41e-112A0A0E0M1Z4_ORYPU; Uncharacterized protein
STRINGSi030056m1e-104(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394